It maybe something else unrelated, best to get a obd2 reader on it.
Or it could be that its just getting used to the new cheater so might take a few miles(im not sure as im still running a egr valve).
If u havnt got a obd2 or op-com there dirt cheap now I got 1 off ebay for £15 delivered and gives codes and etc. Also got op-com off here for about 25ish.