The throttle was opened, and even more - manifold have been taken off.
Today we took the head off again to check everything once more. We simply have poured some diesel in cylinders and leaved for four hours. When we have come back the level of liqud was the same. Valves have been checked in the same way. Everything is tight. Now the head is on again (fortunately, a gasket is cheap). The chain and sprockets not installed yet.
The only thing, that I can surmise is that because of polishing the height of the head has changed and cam phases have displaced.