I would imagine the clicks are the regulator assembly registering too much resistance and stopping the window from going up in the runners.
If you have the door car off then check at the back by the locking assembly to make sure the extension runner is in place and in the right position. Then take some silicon based spray GT85 etc (Pledge if you are stuck) and spray it in the window runners making sure you get plenty in there.
While that's drying get some grease on the actual window assembly where the slider runs on the metal.
Hopefully that should solve your issues 🙂