as above mate, they are wrong and if it were me speaking to them i would have laughed in their face.
the precat is only required for the emissions test when the car is 1st built, after that its not needed and no eml will come on by removing it and mine has passed 2 mot's without it.
Perhaps they thought you were on about the main cat cos that would make the eml light come on as there is 2 sensors for the cat one before and one after the cat.